How to draw (GO) and KEGG pathway
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- čas přidán 25. 08. 2023
- #howtodraw #geneontology #kegg
In this video, I have explained how we can draw GO and KEGG terms using , using SR plot website.
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Great job 👏
Glad you like it
Thanks so much for the video. If in the same pathway I have both up and down genes, how could I do?
You can make a heat map to show up and down in different treatments
Thank u Dr Asif for video. Plz elaborate data preparation, we could not understand, where from and how did u selected KEGG terms, KEGG categories, p values, count and regulation. Sir plz explain how can we obtain these informations from the data we received from BGI company. Also plz tell us how we can find out statistically significant DEGs. Thanks alot.
If you are new to field this video will be helpful
Interpretation of RNA seq data | DEGs | GO | KEGG
czcams.com/video/xc2zEI_5pmw/video.html
Sir.. after submission.. we are not getting result.. its showing error
You prepared the same file as i prepared in the example?
i am trying on this , but it show file was not found
There would be problem in the formatting of your file and data format
The colors not changed all pathways down or up the same colour and i can not solve the problem
You can make separate graphs for up and down. This would be the best way to
with the same colors all colours are gray and I can not change it how can I share my photo to you@@asifmolbio
asifalikalas@foxmail.com
Thank you for this video, How to interpret which gene is responsible for stress after gene ontology because I received 165 gene set and I can't find the proper instructions to interpret how to find specific gene? Can you please help through a video
This you should study literature first which genes are involved in stress. Like WRKY transcription factors are involved in stress. You can try gene ontology enrichment analysis by GO shiny tool and make pathways.
@@asifmolbio thanks so much sir for the reply. If I have further questions, how can I contact you again
asifalikalas@foxmail.com
Sir how can we calculate the p value of a protein molecule easily
How to calculate FC, log2FC, Pvalue, Padj, Up/down genes in RNA seq data using Excel
czcams.com/video/HH3Mll4W5WE/video.html
Sir is m result jaldi nhi ati ....registration b k hn ....
Which analysis you are trying to
Abhi tk hmi koi b result mili nhi hn
You mean website is not working?