Video

For me it's stuck at 0% when it comes to this line: "Installing FSL into /Users/fsl..." No progress after half an hour has passed. I'm on Sonoma.

I get an error, when I type python "/mnt/c/Users/<WindowsUserName>/Downloads/fslinstaller.py" that phyton is not found

Thank you!! It helps a lot!!😁

Amazing talks!

Thanks for the video sir. But im stuck after the installation while typing fslmaths/fsl it shows this - "You need to set the FSLDIR environment variable to point to the FSL installation directory before you can run anything." CAN ANYONE HELP ME

Any sources please for the math and derivations behind it?

Trying to work out if the accent New Zealand, Australian, or either and influenced by time spent in England.

Perfect lecture. Thank you for this comprehensive explanation of tractography.

every time i try intalling fsl it fails:(

Really Helpful, Thanks!

I've just followed the scripts you run, but after the second session, I faced an index error: list index out of range but you didn't face this error How can I fix it?

Some updates for window 10. sudo apt install python3 alias python='python3' (Set alias ) export display did not work for window 10. Then I tried export DISPLAY=:0 It worked.

顶不住了，这口音，快死了

Is there any disease in which water starts to recede from some body structures?

Thank you so much for this. These videos are amazing. You have explained in very simple terms and easily digestible for a beginner in FSL.

Hello, I followed the updated instructions from the website and also watched this video, but I am unable to run fsleyes command and get this error: "mwaniak@DESKTOP-43L11BF:~$ fsleyes Traceback (most recent call last): File "/home/mwaniak/fsl/bin/fsleyes", line 6, in <module> from fsleyes.filtermain import main File "/home/mwaniak/fsl/lib/python3.11/site-packages/fsleyes/__init__.py", line 374, in <module> from fsleyes.main import embed, shutdown # noqa ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/mwaniak/fsl/lib/python3.11/site-packages/fsleyes/main.py", line 35, in <module> import wx File "/home/mwaniak/fsl/lib/python3.11/site-packages/wx/__init__.py", line 17, in <module> from wx.core import * File "/home/mwaniak/fsl/lib/python3.11/site-packages/wx/core.py", line 12, in <module> from ._core import * ImportError: libXxf86vm.so.1: cannot open shared object file: No such file or directory". I can run fsl command which opens the program though. Do you know what could be causing an error?

I wish the voice was clearer!

Hi, I have installed on windows 11. I have even downloaded Xming. However, when I run the fsleyes command, I get the following error Unable to access the X Display, is $DISPLAY set properly? Any ideas?

can I get this ppt?

Thank you this is very helpful! Are there communities in which the ICA maps of the data I am working on can be discussed with some experienced researchers?

what is a b value?\ great video, thanks!

This video and the tutorial needs to be updated. For example, "python" is no longer an available Linux package. For Windows 10, there is no need to use XLaunch as WSL2 supports GUI on the latest Windows version. For Windows 11, GUI is enabled by default.

where can I take the data? i didnt get it

The mixture sounds were screams from hell

Anyone knows how to install FLS in a virtual box Linux? My main operating system is windows 10 and I have a virtual box with Ubuntu. I cannot make sense from the wiki page so far, starting with whether I should follow the Linux instructions or the windows virtual machine ones.

woudn't FNIRT + MNI atlas Thalamus mask do the same trick?

I am trying to align rat brain fMRI to P56 Atlas template. And I'm not quite satisfied with the result. What are the tips for rat brains? And more importantly, how can I manually edit transformation matrices, delete skulls etc?

Hi Everyone! Could you help me out? I installed the fsl, but it is not running. This is what I get from the terminal: ,,zsh: command not found: fslview" What could be the solution for this problem?

I have some problems with flirt/fnirt for rat fMRI. Also I cannot import P56 Allen atlas for rat brain. Why is that?

Thanks for the information. I have a question. Are there any other tools specially on windows platform that can generate brain masks ?

please post link here

Hi, what is a wizard button? Thanks!

How can I do the same thing with the multi subject concatenated ICA?

Thanks for the good explanation!

Thanks!

Our lab collected two field maps one in the AP direction and another in the PA direction, how do we combine the two

Brilliant information.

Thanks for your helpful videos! If I am trying to do two step registration with the first step being linear registration of a T1 image to a T2 image, is it OK to use the FEAT tool and upload the T2 image where you have uploaded the functional data? Then subsequently use FNIRT to perform spatial normalization to MNI space?

Hi need a help

What a great video! Hats off to Oxford's WIN team. I wonder how small can the voxels be and if there is a probabilistic estimation method for the error in estimating the fibre orientations

Life saver! Thanks a bunch.

it could also work on windows 11?

Any recommendations for MacOS Monterey? I've done everything as instructed, but when I check flirt version, it is returned with 'bad CPU in executable:flirt'. Also, miniconda is not installed at the end, so the post install set up always fails..

xming is not functional and no GUIs open, I would really appreciate more detail in how to get FSL completely installed and running.

/fslinstaller.py" [FAILED] [Errno -3] Temporary failure in name resolution, please advise on how to address this error.

very bad audio quality!

I have followed the steps but during fal installation after downloading and entering my terminal cursor rotating. Is this an error?