Gene set analysis - GSEA and Fisher's exact test

Sdílet
Vložit
  • čas přidán 30. 06. 2024
  • See all my videos at:
    www.tilestats.com
    In this video, we will learn about gene set analysis:
    1. Gene ontology and KEGG
    2. Overrepresented genes - an example (02:00)
    3. Fisher's exact test (04:00)
    4. Adjust the p-values by BH (07:20)
    5. Gene set enrichment analysis (GSEA) (08:53)
    6. An example of an online tool (11:28)

Komentáře • 9

  • @pancake9191
    @pancake9191 Před rokem +1

    best video I've watched on this topic

  • @amrsalaheldinabdallahhammo663

    Very helpful, thanks a lot, I wish to see more videos about GSEA and Gene ontology :)

  • @footballchannel8430
    @footballchannel8430 Před rokem +1

    this video is a masterpiece

  • @Mkvine
    @Mkvine Před rokem +1

    Wow this has been so helpful. Thank you so much!

  • @esan120au
    @esan120au Před rokem +1

    Excellent job! Thank you

  • @ryanpotter128
    @ryanpotter128 Před 2 lety

    Super helpful!

  • @esan120au
    @esan120au Před rokem +1

    08:53 GSEA

  • @yvesaubry7556
    @yvesaubry7556 Před 7 měsíci

    Thank you for your video.
    I tried to compute the p-value from Fisher's exact test with the table shown at 5'40, and get 0.306.
    Could you explain how you get 0.93 ?

    • @tilestats
      @tilestats  Před 7 měsíci

      Which software did you use?