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OMGenomics
United States
Registrace 23. 02. 2017
Bioinformatics discussions and training videos.
Hosted by Maria Nattestad.
Hosted by Maria Nattestad.
First sneak peek of Circa 2.0
Coming in October! Sign up for Circa 2.0 updates on circa.omgenomics.com
Song: Elektronomia & RUD - Memory [NCS Release]
Music provided by NoCopyrightSounds
Free Download/Stream: ncs.io/Memory
Watch: czcams.com/video/EnuGdwI0W1g/video.html
Song: Elektronomia & RUD - Memory [NCS Release]
Music provided by NoCopyrightSounds
Free Download/Stream: ncs.io/Memory
Watch: czcams.com/video/EnuGdwI0W1g/video.html
zhlédnutí: 709
Video
Rewriting software is bad... but it might work for us | OMGenomics podcast
zhlédnutí 904Před měsícem
10 years of building software in industry taught me that rewriting software is nearly always a bad idea. Here's why I'm doing it anyway 😁 omgenomics.com/podcast
Academic software | OMGenomics podcast
zhlédnutí 1,5KPřed 4 měsíci
Academic software has a bad reputation for being poorly maintained. We discuss our experiences maintaining our own bioinformatics tools and the systemic issues that influence the quality of academic software. Topics * Lessons we've learned from maintaining our 8 year old tools: Ginkgo, Assemblytics, SplitThreader, Ribbon. * Discussing career implications and systemic incentives of maintaining a...
Bioinformatics for Beginners
zhlédnutí 27KPřed 10 měsíci
The 3 core skills to start with. Where to focus your learning depending on your level of biology expertise.
So good they can’t ignore you | OMGenomics podcast
zhlédnutí 1,9KPřed rokem
Talking about the book "So good they can't ignore you" by Cal Newport and how it relates to bioinformatics with some random stories from our own lives.
Running biotech startups differently with Kaja Wasik
zhlédnutí 1,4KPřed rokem
In this episode, our guest Kaja Wasik, co-founder of two genomics biotech companies, including Variant Bio, shares her journey in the biotech startup industry. We delve into how Kaja has managed to ethically collect genetic data from more than 20 intriguing populations worldwide. We explore her unique approach to conducting genetic research within diverse communities, discuss specific studies u...
Consulting with Nils Homer | OMGenomics podcast
zhlédnutí 1,8KPřed rokem
We interview Nils Homer, the co-founder of Fulcrum Genomics, a thriving bioinformatics consulting business. Highlights: * Why Nils decided to start a consulting business in the bioinformatics space. * Embracing open-source. * Finding customers is the easy part. * Scoping and pricing in science when figuring out what work is possible or necessary is a huge part of the work itself. * Why Nils bel...
Circa for RNAseq: Differential expression circos plot
zhlédnutí 2,6KPřed rokem
Using Circa to make a circos plot of differential gene expression results from DESeq2. * 0:00 Loading data into Circa * 3:13 Fixing problematic data using Google Sheets * 9:47 Styling the plot with neon color scheme Buy Circa: omgenomics.com/circa Data from this paper: www.mdpi.com/2072-6694/13/17/4485#B24-cancers-13-04485 - thank you Vikas!
The PhD Question with Steve Osazuwa on the OMGenomics Podcast
zhlédnutí 2,3KPřed rokem
Our guest Steve Osazuwa helps us answer the PhD question (namely, should you do one?). Since we both have PhDs, we are bringing on our friend Steve who has been successful in bioinformatics industry without a PhD to add his perspectives. Topics * How Steve ended up in bioinformatics. * Starting a PhD after working in industry. * What Steve’s barber thinks. * Would we do a PhD again? * The oppor...
Job hopping | OMGenomics podcast
zhlédnutí 768Před rokem
Inspired by opinions seen on Twitter, we discuss whether people should stay much more than 1 year per company to avoid being judged by future employers as a job-hopper, and whether companies should be discriminating this way. Topics: * Benefits of job hopping, early versus late in your career. * A debatable statement by chatGPT. * Is it ethically okay? disloyal? greedy? * Being loyal to a corpo...
You might be an imposter | OMGenomics podcast
zhlédnutí 1KPřed rokem
Accepting that we're all imposters in bioinformatics, we tell stories from our own careers. Topics: * Robert's grad school experience in a biology program coming from a computer engineering background. * Maria's experience interviewing at grad schools. * "You can't just go around being like, I'm an idiot. Even if you feel like an idiot, that's just not helpful."
Sabbaticals | OMGenomics podcast
zhlédnutí 1,3KPřed rokem
We discuss our experiences with unofficial industry sabbaticals, aka taking time between jobs for our own projects. Topics: * Funemployment versus sabbatical * Robert's 2021 sabbatical building sandbox.bio learning platform and 42basepairs genomics cloud platform * Maria's 2017 OMGenomics entrepreneurship experience, building Circa visualization software and a CZcams channel * Sabbatical projec...
Using GNU parallel painlessly -- from basics to bioinformatics job orchestration
zhlédnutí 14KPřed rokem
Basics of GNU parallel, how to use it to run scripts and functions, all the way to using parallel to orchestrate launching jobs with different parameters like we often do in bioinformatics. You can find all the code from this video here: omgenomics.com/parallel
Why I use vim for bioinformatics
zhlédnutí 7KPřed 2 lety
In bioinformatics, we often find ourselves editing scripts while ssh-ing into a remote server, which means using command-line editors instead of our favorite GUI editor like VSCode.
How I organize my bioinformatics work
zhlédnutí 12KPřed 2 lety
3 systems I use to keep myself organized when doing bioinformatics work. These are lightweight, flexible systems built on top of git, basic text files, and a single Google Doc no to-do list apps here :) 0:00 Introduction 1:07 The lab notebook 5:05 The journal 11:17 The logs
Trends in genomics I'm most excited about
zhlédnutí 7KPřed 2 lety
Trends in genomics I'm most excited about
How to land bioinformatics jobs in industry? Answering your questions!
zhlédnutí 16KPřed 2 lety
How to land bioinformatics jobs in industry? Answering your questions!
Genes and geography -- a bioinformatics project
zhlédnutí 30KPřed 2 lety
Genes and geography a bioinformatics project
Test-driving GitHub copilot for bioinformatics algorithms
zhlédnutí 6KPřed 2 lety
Test-driving GitHub copilot for bioinformatics algorithms
Answering your bioinformatics questions
zhlédnutí 7KPřed 3 lety
Answering your bioinformatics questions
Mint spending analysis with Pandas and Altair
zhlédnutí 2,9KPřed 3 lety
Mint spending analysis with Pandas and Altair
5 tips for better bioinformatics software
zhlédnutí 11KPřed 3 lety
5 tips for better bioinformatics software
Maria Nattestad interviewed on The Genomics Life podcast
zhlédnutí 3,4KPřed 3 lety
Maria Nattestad interviewed on The Genomics Life podcast
Five steps for getting started with bioinformatics
zhlédnutí 89KPřed 4 lety
Five steps for getting started with bioinformatics